PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897384
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 633aa    MW: 71687.4 Da    PI: 4.6216
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897384genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.7e-36451352101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+ +nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+
     462897384  45 FLTKTYDMVDDPTTDHVVSWSAGNNSFVVWDPHAFATVMLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKNIR 132
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     462897384 133 RRK 135
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3941134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.05E-3641134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6241134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-184568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-188395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004150.0015314404IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.89E-5372404IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-5374404IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MDPMLNAVKE ESSHGEGGLL GVAEDGPATA PRPMEGLHDA GPPPFLTKTY DMVDDPTTDH  60
VVSWSAGNNS FVVWDPHAFA TVMLPRHFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGQKHLLKN IRRRKPPAHN APNQQSVGPY LEVGHFGYEA EIDQLKRDKQ LLMAEVVKLR  180
QEQQNTKANL KAMEDRLQGT EQKQLQMMAF LARVMRNPEF LKQLMSQNEM RKELQEAISK  240
KRRRRIDQGP EVDDLGASSS LEQGSPLLFD PPDPAEFLVD GIPTDIGNSA LDAEVLVETQ  300
GIDLGISEQQ QNIPQADFSE DFWEQLLNEG LAEENDNPVI EDDMNVLSEK MGYLNSDSPT  360
SRKYPSPELT AAGGFRKVDP DRWEFANEGF LRGQKHLLKN IRRRKPPAHN APNQQSVGPY  420
LEVGHFGYEA EIDRLKRDKQ LLMAEVVKLR QEQQNTKANL KAMEDRLQGT EQKQLQMMAF  480
LARVMRNPEF LKQLMSQNEM RKELQEAISK KRRRRIDQGP EVDDLGASSS LEQGSPLLFD  540
PPDPAEFLVD GIPTDIGNSA LDAEVLVEPQ GIDLGISEQQ QNIPQADFNE DFWEQLLNEG  600
LAEENDNPVI EDDMNVLSEK MGYLNSDSPT SRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254013412120Heat shock factor protein 1
5d5u_B1e-254013421129Heat shock factor protein 1
5d5v_B1e-254013421129Heat shock factor protein 1
5d5v_D1e-254013421129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1509514KKRRRR
2510515KRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1566300.0KU156630.1 Cynodon transvaalensis heat stress transcription factor A2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955620.10.0PREDICTED: heat stress transcription factor A-2b-like
RefseqXP_012698852.10.0PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLK3ZUH50.0K3ZUH5_SETIT; Uncharacterized protein
STRINGSi030256m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B